Variant report

Variant	rs10935320
Chromosome Location	chr3:139056584-139056585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139055985..139057800-chr3:139059235..139061207,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1044826	0.92[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10460845	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1080371	0.83[CHD][hapmap]
rs10935323	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12488939	0.90[ASN][1000 genomes]
rs12494806	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12695698	0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12695699	0.88[ASN][1000 genomes]
rs12695700	0.81[ASN][1000 genomes]
rs13060697	0.92[ASN][1000 genomes]
rs13074208	0.81[ASN][1000 genomes]
rs13083195	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13085888	0.87[ASN][1000 genomes]
rs13086868	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13089007	0.97[ASN][1000 genomes]
rs13089090	0.86[ASN][1000 genomes]
rs13092507	0.84[ASN][1000 genomes]
rs13092935	0.88[ASN][1000 genomes]
rs1586861	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1586863	0.90[ASN][1000 genomes]
rs1586864	0.90[ASN][1000 genomes]
rs167187	0.83[CHD][hapmap]
rs17336869	0.90[ASN][1000 genomes]
rs188421	0.83[CHD][hapmap]
rs1907687	0.90[ASN][1000 genomes]
rs2165139	0.81[ASN][1000 genomes]
rs2233811	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2233815	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2349059	0.87[ASN][1000 genomes]
rs34623690	0.90[ASN][1000 genomes]
rs3772877	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3772878	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3772879	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3821544	0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3821545	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4544576	0.90[ASN][1000 genomes]
rs4683464	0.83[CHD][hapmap]
rs6439860	0.83[CHD][hapmap]
rs6771831	0.83[CHD][hapmap]
rs67929453	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9289576	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9289578	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs964227	0.87[ASN][1000 genomes]
rs973691	0.90[ASN][1000 genomes]
rs9812192	0.90[ASN][1000 genomes]
rs9818691	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9825064	0.83[ASW][hapmap];0.83[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9831108	0.83[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.97[ASN][1000 genomes]
rs9834607	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9835241	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9848241	0.90[ASN][1000 genomes]
rs9849039	0.87[ASN][1000 genomes]
rs9849578	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9853350	0.97[ASN][1000 genomes]
rs9859864	0.83[CHD][hapmap]
rs9860201	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9860521	0.81[ASN][1000 genomes]
rs9868544	0.87[ASN][1000 genomes]
rs9882014	0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv4034	chr3:139034976-139080133	Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3392741	chr3:139053612-139056710	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139048200-139062400	Weak transcription	Right Atrium	heart
2	chr3:139056000-139057800	Enhancers	K562	blood

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