Variant report

Variant	rs10935491
Chromosome Location	chr3:143106759-143106760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143106712..143109351-chr3:143117570..143120299,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10513200	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10513201	0.94[ASN][1000 genomes]
rs10935492	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11707045	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11707857	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711590	0.84[EUR][1000 genomes]
rs11719681	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846341	0.97[ASN][1000 genomes]
rs16853522	0.97[ASN][1000 genomes]
rs16853578	0.94[ASN][1000 genomes]
rs17757146	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17757182	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1875459	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2360255	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35233571	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35358995	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36125349	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4311209	0.97[ASN][1000 genomes]
rs4521222	0.97[ASN][1000 genomes]
rs56080141	0.97[ASN][1000 genomes]
rs56152928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61301417	0.97[ASN][1000 genomes]
rs6770293	0.95[ASN][1000 genomes]
rs6782465	0.97[ASN][1000 genomes]
rs73144740	0.86[ASN][1000 genomes]
rs73144743	0.92[ASN][1000 genomes]
rs73144745	0.91[ASN][1000 genomes]
rs73144749	0.97[ASN][1000 genomes]
rs73144760	0.96[ASN][1000 genomes]
rs73144769	0.92[ASN][1000 genomes]
rs73144770	0.95[ASN][1000 genomes]
rs73144771	0.95[ASN][1000 genomes]
rs73144772	0.95[ASN][1000 genomes]
rs73144773	0.95[ASN][1000 genomes]
rs73144774	0.95[ASN][1000 genomes]
rs73144777	0.95[ASN][1000 genomes]
rs7374585	0.92[ASN][1000 genomes]
rs7617737	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7627844	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7652087	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7652557	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877565	chr3:143078986-143116883	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv999000	chr3:143086325-143136128	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143100600-143142600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143102200-143110600	Weak transcription	Fetal Lung	lung
3	chr3:143103800-143109000	Weak transcription	Fetal Thymus	thymus
4	chr3:143106400-143106800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:143106400-143106800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:143106400-143107000	Enhancers	H1 Cell Line	embryonic stem cell

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