Variant report

Variant	rs10935665
Chromosome Location	chr3:147020326-147020327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513309	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1394046	0.83[EUR][1000 genomes]
rs1500867	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17567518	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2133939	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2651316	0.83[EUR][1000 genomes]
rs2654819	0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs2654820	0.86[CEU][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs62275345	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6794941	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7622107	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs7629647	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7639019	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs884370	0.84[CEU][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385588	chr3:146782324-147083081	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv877628	chr3:146964828-147058367	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv1013080	chr3:147008962-147167690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536763	chr3:147008962-147167690	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:147017600-147022800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:147017800-147022800	Weak transcription	NH-A	brain
3	chr3:147017800-147023000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:147017800-147023200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:147018400-147022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:147018400-147023000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:147019400-147020600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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