Variant report

Variant	rs10936224
Chromosome Location	chr3:160902531-160902532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1026572	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10936223	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12493960	0.81[EUR][1000 genomes]
rs12495310	0.91[AMR][1000 genomes]
rs12631850	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13083229	0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes]
rs1478568	0.93[TSI][hapmap]
rs1599374	0.82[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs1599376	0.81[EUR][1000 genomes]
rs1599379	0.84[AMR][1000 genomes]
rs1599381	0.87[AMR][1000 genomes]
rs336572	0.83[TSI][hapmap]
rs4290817	0.91[AMR][1000 genomes]
rs4443189	0.85[JPT][hapmap]
rs4557202	0.82[CEU][hapmap]
rs4560315	0.91[AMR][1000 genomes]
rs4618258	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs4856714	0.91[AMR][1000 genomes]
rs4856767	0.89[AMR][1000 genomes]
rs55688744	0.91[AMR][1000 genomes]
rs6441354	0.82[CEU][hapmap];0.93[TSI][hapmap]
rs6765270	0.81[EUR][1000 genomes]
rs6768818	0.91[AMR][1000 genomes]
rs6770585	0.86[JPT][hapmap]
rs6778254	0.88[EUR][1000 genomes]
rs6789244	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6791213	0.92[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes]
rs6799130	0.81[AMR][1000 genomes]
rs6809256	0.87[AMR][1000 genomes]
rs7613227	0.81[AMR][1000 genomes]
rs7627528	0.88[AMR][1000 genomes]
rs7630674	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7630768	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7633857	0.83[AMR][1000 genomes]
rs7636941	0.89[AMR][1000 genomes]
rs7652267	0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes]
rs899275	0.87[AMR][1000 genomes]
rs9290069	0.88[EUR][1000 genomes]
rs9809522	0.91[AMR][1000 genomes]
rs9815222	0.89[AMR][1000 genomes]
rs9834659	0.91[AMR][1000 genomes]
rs9841965	0.87[JPT][hapmap]
rs9864752	0.89[CEU][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9871480	0.87[JPT][hapmap]
rs9879687	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10936224	PPM1L	cis	cerebellum	SCAN
rs10936224	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160902200-160903400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:160902400-160902800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:160902400-160902800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:160902400-160903000	Enhancers	HUES64 Cell Line	embryonic stem cell

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