Variant report

Variant	rs10937924
Chromosome Location	chr4:3374898-3374899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:3372648..3375101-chr4:3385736..3387279,2	K562	blood:

Variant related genes	Relation type
ENSG00000159788	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10155132	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13104157	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13150241	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2071666	0.80[ASN][1000 genomes]
rs2236052	0.91[EUR][1000 genomes]
rs2239725	0.84[EUR][1000 genomes]
rs2748447	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2749778	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2749780	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2749781	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2749782	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2749783	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2857982	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3129308	0.86[EUR][1000 genomes]
rs3129310	0.85[EUR][1000 genomes]
rs3129327	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3129328	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3129334	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3135145	0.85[EUR][1000 genomes]
rs3135146	0.86[EUR][1000 genomes]
rs60181496	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60208975	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6819202	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7435601	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs881816	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs881817	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs910568	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv878456	chr4:3215835-3467519	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv878462	chr4:3311548-3505448	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1007847	chr4:3317904-3527357	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv537001	chr4:3317904-3527357	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv878463	chr4:3363994-3498896	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3368800-3376800	Enhancers	Spleen	Spleen
2	chr4:3371200-3375800	Weak transcription	Gastric	stomach
3	chr4:3371600-3378000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:3371800-3376000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:3372000-3375000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:3372200-3375600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr4:3372200-3375600	Enhancers	Adipose Nuclei	Adipose
8	chr4:3372200-3377400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:3372200-3377600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:3372200-3378000	Weak transcription	Aorta	Aorta
11	chr4:3372200-3382000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:3372200-3386400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:3372400-3375000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:3372400-3375000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:3372400-3375000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:3372400-3375200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:3372400-3375200	Enhancers	Left Ventricle	heart
18	chr4:3372400-3375400	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:3372400-3375400	Enhancers	Right Ventricle	heart
20	chr4:3372400-3375600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:3372400-3375600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr4:3372400-3377400	Weak transcription	Osteobl	bone
23	chr4:3372400-3377800	Weak transcription	NHDF-Ad	bronchial
24	chr4:3372400-3382000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:3372600-3377400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:3372600-3377600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:3372800-3375200	Enhancers	Ovary	ovary
28	chr4:3373000-3375000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:3373000-3376200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr4:3373000-3378000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:3373000-3389000	Weak transcription	Psoas Muscle	Psoas
32	chr4:3373200-3375600	Enhancers	Fetal Thymus	thymus
33	chr4:3373400-3375000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:3373400-3375400	Enhancers	Placenta	Placenta
35	chr4:3373400-3375600	Enhancers	Lung	lung
36	chr4:3373400-3375800	Enhancers	Primary B cells from peripheral blood	blood
37	chr4:3373400-3377400	Weak transcription	HepG2	liver
38	chr4:3373400-3377600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:3373400-3377600	Weak transcription	HSMMtube	muscle
40	chr4:3373400-3380800	Weak transcription	Brain Angular Gyrus	brain
41	chr4:3373400-3382000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr4:3373400-3388400	Weak transcription	Fetal Kidney	kidney
43	chr4:3373400-3388800	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:3373600-3377600	Weak transcription	Fetal Intestine Large	intestine
45	chr4:3373600-3378200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr4:3373800-3375000	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr4:3373800-3376800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr4:3373800-3377600	Weak transcription	HSMM	muscle
49	chr4:3373800-3378600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr4:3374000-3375200	Enhancers	NH-A	brain

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