Variant report

Variant	rs10938707
Chromosome Location	chr4:8339111-8339112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8337029..8339751-chr4:8340402..8342759,2	K562	blood:
2	chr4:8338499..8340014-chr4:8350078..8351770,2	K562	blood:
3	chr4:8326199..8328705-chr4:8337836..8339581,2	K562	blood:
4	chr4:8315694..8318647-chr4:8336893..8339393,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11734253	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2386219	0.83[AMR][1000 genomes]
rs28656339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28695446	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28735746	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35384843	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35731229	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4696815	0.84[AMR][1000 genomes]
rs6447862	0.80[EUR][1000 genomes]
rs6447864	0.84[AMR][1000 genomes]
rs6447865	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6819782	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6824833	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6825003	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6825025	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6825242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6825603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6833458	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6839451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6852935	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6858268	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7655911	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7661009	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7675171	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv470013	chr4:8315938-8377058	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv878605	chr4:8332057-8378959	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8333400-8342400	Weak transcription	Psoas Muscle	Psoas
2	chr4:8333400-8342400	Weak transcription	Right Atrium	heart
3	chr4:8337200-8341800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:8337200-8342400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:8337200-8343200	Weak transcription	Fetal Kidney	kidney
6	chr4:8337400-8343200	Weak transcription	Right Ventricle	heart
7	chr4:8337400-8344400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:8338000-8339400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:8338200-8344800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr4:8338400-8339200	Flanking Active TSS	HMEC	breast
11	chr4:8338600-8339400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:8338800-8339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:8338800-8339200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:8338800-8342600	Weak transcription	HSMM	muscle
15	chr4:8339000-8339200	Enhancers	NHEK	skin
16	chr4:8339000-8342400	Weak transcription	K562	blood
17	chr4:8339000-8342600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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