The 2.0 version of rSNPBase

Variant report

Variant rs10940371
Chromosome Location chr5:53573632-53573633
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:53537400-53575200 Weak transcription Primary hematopoietic stem cells blood
2 chr5:53555600-53575800 Weak transcription Primary B cells from cord blood blood
3 chr5:53558800-53575600 Weak transcription Aorta Aorta
4 chr5:53565600-53575200 Weak transcription Fetal Stomach stomach
5 chr5:53568200-53595600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:53568600-53573800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr5:53569000-53575800 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr5:53569200-53585600 Weak transcription Fetal Thymus thymus
9 chr5:53569600-53579400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr5:53569800-53574000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr5:53569800-53583400 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr5:53570000-53573800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr5:53570000-53574000 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr5:53570000-53575600 Weak transcription Lung lung
15 chr5:53570000-53581400 Weak transcription Right Atrium heart
16 chr5:53570000-53591800 Weak transcription Gastric stomach
17 chr5:53570200-53573800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr5:53570200-53573800 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr5:53570200-53573800 Weak transcription Fetal Intestine Large intestine
20 chr5:53570200-53573800 Weak transcription Fetal Intestine Small intestine
21 chr5:53570200-53573800 Weak transcription Left Ventricle heart
22 chr5:53570200-53573800 Weak transcription Pancreas Pancrea
23 chr5:53570200-53574000 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr5:53570200-53575200 Weak transcription Primary T cells fromperipheralblood blood
25 chr5:53570600-53581600 Weak transcription Fetal Lung lung
26 chr5:53570800-53575200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr5:53571200-53574000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr5:53571400-53573800 Weak transcription Placenta Placenta
29 chr5:53571400-53581600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr5:53571800-53573800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr5:53571800-53575800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr5:53571800-53577200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr5:53572000-53574400 Weak transcription H1 Cell Line embryonic stem cell
34 chr5:53572200-53574000 Weak transcription HMEC breast
35 chr5:53572200-53578200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:53572400-53575400 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr5:53572400-53575600 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr5:53572400-53575600 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr5:53572600-53574000 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr5:53572600-53574000 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr5:53572600-53575400 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr5:53572600-53575600 Enhancers Breast Myoepithelial Primary Cells Breast
43 chr5:53572600-53575600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr5:53572800-53573800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr5:53572800-53573800 Weak transcription Right Ventricle heart
46 chr5:53573000-53573800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr5:53573000-53576000 Weak transcription Primary T helper naive cells fromperipheralblood blood
48 chr5:53573200-53577200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
49 chr5:53573600-53574800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
50 chr5:53573600-53575600 Enhancers K562 blood

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Last update: Aug 31, 2015