Variant report

Variant	rs10941264
Chromosome Location	chr5:35796447-35796448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11749262	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3822736	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56322028	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6883204	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6895099	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35788400-35796800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:35788800-35796800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:35790800-35796800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:35791000-35799600	Weak transcription	Osteobl	bone
6	chr5:35791200-35797000	Weak transcription	NHDF-Ad	bronchial
7	chr5:35792200-35796800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr5:35792600-35797000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr5:35792800-35796800	Enhancers	Primary T cells from cord blood	blood
10	chr5:35792800-35796800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:35793000-35796800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr5:35793200-35796800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr5:35793200-35798600	Enhancers	Fetal Thymus	thymus
14	chr5:35793400-35797000	Enhancers	Thymus	Thymus
15	chr5:35793400-35798000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:35793600-35796800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr5:35794000-35796800	Enhancers	Dnd41	blood
18	chr5:35794600-35796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:35794800-35796800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:35795200-35796800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr5:35795200-35797200	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:35795200-35802600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:35795400-35796800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:35795400-35797000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:35795400-35798000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr5:35795400-35798200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:35796000-35800000	Weak transcription	HSMMtube	muscle
28	chr5:35796400-35797600	Enhancers	Fetal Brain Male	brain

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