Variant report

Variant	rs10942572
Chromosome Location	chr5:89065365-89065366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10046069	0.85[ASN][1000 genomes]
rs10063070	0.93[ASN][1000 genomes]
rs10474308	0.81[ASN][1000 genomes]
rs12515848	0.81[ASN][1000 genomes]
rs1363180	0.85[ASN][1000 genomes]
rs1819994	0.85[ASN][1000 genomes]
rs4145580	0.81[ASN][1000 genomes]
rs73178742	0.82[ASN][1000 genomes]
rs9293526	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830390	chr5:89054602-89236583	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89053200-89068400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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