Variant report

Variant	rs10943851
Chromosome Location	chr6:82786191-82786192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10943852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758730	0.89[EUR][1000 genomes]
rs12208976	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1577874	0.90[ASN][1000 genomes]
rs16893850	0.97[ASN][1000 genomes]
rs1984257	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096162	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226121	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28429753	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3863235	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6919551	0.93[EUR][1000 genomes]
rs9341907	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82782400-82786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:82782800-82786400	Weak transcription	HSMM	muscle
3	chr6:82783400-82786200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:82783400-82786400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:82783400-82793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:82783400-82797800	Weak transcription	Left Ventricle	heart
7	chr6:82783600-82786400	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:82783600-82786400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:82783600-82786400	Weak transcription	Osteobl	bone
10	chr6:82783600-82788000	Weak transcription	HepG2	liver
11	chr6:82784800-82786200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:82784800-82786400	Weak transcription	Adipose Nuclei	Adipose
13	chr6:82784800-82786400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:82784800-82787800	Weak transcription	Right Ventricle	heart
15	chr6:82785000-82786200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:82785000-82786200	Weak transcription	NHDF-Ad	bronchial
17	chr6:82785600-82788200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:82785800-82786200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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