Variant report

Variant	rs10944559
Chromosome Location	chr6:80759213-80759214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1204114	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1358884	0.89[EUR][1000 genomes]
rs1407317	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16899915	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17253818	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17254473	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs213783	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4513770	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59899220	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62416564	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62416613	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62426169	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7744702	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7776023	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs964655	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886307	chr6:80724666-80765111	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886308	chr6:80734870-80765111	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80715600-80763800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:80721600-80760400	Weak transcription	Fetal Kidney	kidney
3	chr6:80732800-80762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:80742400-80760200	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:80743200-80759400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:80751000-80764800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:80751000-80766200	Weak transcription	NHLF	lung
8	chr6:80752800-80763400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:80753200-80765400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:80753200-80772200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:80753600-80765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:80753800-80765800	Weak transcription	HSMM	muscle
13	chr6:80757000-80763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:80757200-80759400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:80757200-80759600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:80757200-80760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:80757200-80760800	Weak transcription	Fetal Thymus	thymus
18	chr6:80757200-80763400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:80757200-80763400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:80757400-80763400	Weak transcription	Thymus	Thymus
21	chr6:80757600-80766000	Weak transcription	Dnd41	blood

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