Variant report

Variant	rs10946179
Chromosome Location	chr6:167040463-167040464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167027136..167029744-chr6:167037956..167040696,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10946178	0.83[EUR][1000 genomes]
rs12199983	0.81[EUR][1000 genomes]
rs3799566	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456097	0.89[EUR][1000 genomes]
rs6456098	0.89[EUR][1000 genomes]
rs6927052	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6929319	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs916389	0.89[EUR][1000 genomes]
rs9366035	0.86[ASN][1000 genomes]
rs9459701	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023649	chr6:167026469-167060732	Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3411974	chr6:167039387-167042335	Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3518220	chr6:167039912-167042110	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3518221	chr6:167039912-167042110	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167038200-167041800	Active TSS	Right Ventricle	heart
2	chr6:167038400-167042200	Active TSS	Psoas Muscle	Psoas
3	chr6:167038600-167041800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:167038600-167042000	Active TSS	Lung	lung
5	chr6:167039000-167041200	Active TSS	Right Atrium	heart
6	chr6:167039000-167041800	Active TSS	Left Ventricle	heart
7	chr6:167039200-167040600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:167039200-167041600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:167039200-167041800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:167039200-167041800	Active TSS	Muscle Satellite Cultured Cells	--
11	chr6:167039200-167041800	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:167039200-167041800	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr6:167039200-167041800	Active TSS	HSMMtube	muscle
14	chr6:167039400-167040600	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr6:167039400-167040600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr6:167039400-167040600	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr6:167039400-167040600	Flanking Bivalent TSS/Enh	Thymus	Thymus
18	chr6:167039400-167041600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:167039400-167041600	Active TSS	HSMM	muscle
20	chr6:167039400-167041800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:167039400-167041800	Active TSS	Brain Cingulate Gyrus	brain
22	chr6:167039400-167041800	Active TSS	Colonic Mucosa	Colon
23	chr6:167039400-167041800	Active TSS	Fetal Brain Female	brain
24	chr6:167039400-167041800	Active TSS	NHDF-Ad	bronchial
25	chr6:167039400-167042000	Active TSS	Pancreas	Pancrea
26	chr6:167039400-167042200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:167039400-167042400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:167039600-167041600	Active TSS	Small Intestine	intestine
29	chr6:167039600-167041600	Active TSS	NHLF	lung
30	chr6:167039600-167041800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:167039600-167041800	Active TSS	Brain Angular Gyrus	brain
32	chr6:167039600-167041800	Active TSS	Esophagus	oesophagus
33	chr6:167039600-167042200	Active TSS	Gastric	stomach
34	chr6:167039600-167042200	Active TSS	Ovary	ovary
35	chr6:167039800-167040600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:167039800-167040600	Active TSS	Stomach Mucosa	stomach
37	chr6:167039800-167040600	Flanking Active TSS	Dnd41	blood
38	chr6:167039800-167040800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:167039800-167041400	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr6:167039800-167041400	Active TSS	NHEK	skin
41	chr6:167039800-167041600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:167039800-167041600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:167039800-167041600	Active TSS	HUVEC	blood vessel
44	chr6:167039800-167041800	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr6:167039800-167041800	Active TSS	Brain Hippocampus Middle	brain
46	chr6:167039800-167041800	Active TSS	Fetal Kidney	kidney
47	chr6:167039800-167041800	Active TSS	Fetal Lung	lung
48	chr6:167039800-167041800	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr6:167039800-167041800	Active TSS	HMEC	breast
50	chr6:167039800-167042000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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