Variant report

Variant	rs10946621
Chromosome Location	chr6:23729138-23729139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10456039	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12190420	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12199845	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12661549	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12664343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13213972	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9393440	0.92[ASN][1000 genomes]
rs9393443	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv14730	chr6:23711548-23746486	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23726800-23730000	Weak transcription	Stomach Mucosa	stomach
2	chr6:23728200-23730800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:23728800-23729200	Enhancers	Fetal Intestine Large	intestine
4	chr6:23728800-23729200	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:23728800-23729400	Enhancers	Fetal Lung	lung
6	chr6:23728800-23730600	Enhancers	Fetal Heart	heart
7	chr6:23729000-23729400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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