Variant report

Variant	rs10946725
Chromosome Location	chr6:24739372-24739373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10946723	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs12192084	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12194719	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12207801	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap]
rs13190693	0.91[AMR][1000 genomes]
rs13201701	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2328832	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs71555160	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24738800-24739400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:24738800-24739600	Enhancers	Stomach Mucosa	stomach
3	chr6:24738800-24739800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:24739000-24739400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:24739000-24739400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:24739000-24739400	Enhancers	Adipose Nuclei	Adipose
7	chr6:24739000-24739400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:24739000-24739400	Enhancers	Osteobl	bone
9	chr6:24739200-24739400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:24739200-24740800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:24739200-24742400	Weak transcription	NHEK	skin
12	chr6:24739200-24742600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:24739200-24742800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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