Variant report

Variant	rs10948204
Chromosome Location	chr6:45124300-45124301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45124236..45126557-chr6:45137066..45139205,2	MCF-7	breast:
2	chr6:45120420..45122464-chr6:45122631..45125594,2	K562	blood:

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10456121	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10456122	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10456542	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456543	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10456546	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10456547	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10456548	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10456549	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10948201	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948211	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948212	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948213	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948214	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948216	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948217	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10948219	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10948220	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10948221	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10948223	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10948226	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11961316	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11963924	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11964690	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11964844	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11965520	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11965706	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11967630	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11970412	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11970496	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12153922	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12190367	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12191262	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12191521	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12191566	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191751	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12192890	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12193030	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12193682	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12193720	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193812	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12194682	0.81[EUR][1000 genomes]
rs12196217	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12198376	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198982	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12199256	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12199507	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12199871	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12201005	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12201555	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12201899	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12202232	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12202434	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12203558	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12205379	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12205468	0.81[EUR][1000 genomes]
rs12205523	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12205860	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12205905	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12206561	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12206568	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209161	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211519	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12212745	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12213735	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12214749	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12214885	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1324536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17209636	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17209678	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17209741	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17209769	0.80[EUR][1000 genomes]
rs17288250	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1853651	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2038765	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093900	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2396379	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28583363	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34455867	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4267941	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4288203	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4400216	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4443508	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4478406	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4479922	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4498350	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4544895	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55779653	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55964727	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56283067	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56337964	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56357385	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56397204	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58769170	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62400267	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62400268	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62400269	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62400289	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62400290	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62400293	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62400317	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62400326	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62400330	0.80[EUR][1000 genomes]
rs62436760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436778	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436779	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436780	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62436781	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62436782	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62438863	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62438864	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62438867	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62438877	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6908606	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6909047	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6919813	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6919873	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6919998	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6920046	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6924185	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6927213	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72857080	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72858517	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72860105	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72869118	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869127	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72870950	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7449537	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45122000-45125000	Enhancers	Primary T cells from cord blood	blood
2	chr6:45122200-45125000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:45122200-45125000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:45122400-45124400	Enhancers	K562	blood
5	chr6:45122400-45124800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:45122400-45125000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:45122400-45125000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:45122600-45125000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:45122800-45125000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:45123000-45124800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:45123000-45125000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:45123200-45126800	Enhancers	Dnd41	blood
13	chr6:45123600-45130000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:45124200-45124800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:45124200-45125000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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