Variant report

Variant	rs10948272
Chromosome Location	chr6:45991252-45991253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10456556	0.87[CHB][hapmap]
rs10948268	0.87[CHB][hapmap]
rs10948271	1.00[ASW][hapmap];0.87[CHB][hapmap]
rs1338467	0.87[CHB][hapmap]
rs1338469	0.87[CHB][hapmap]
rs1338472	0.87[CHB][hapmap]
rs1338474	0.87[CHB][hapmap]
rs1555216	0.87[CHB][hapmap]
rs2039716	0.87[CHB][hapmap]
rs2144163	0.87[CHB][hapmap]
rs3777605	0.87[CHB][hapmap]
rs3777606	0.87[CHB][hapmap]
rs3777611	0.87[CHB][hapmap]
rs3777616	0.87[CHB][hapmap]
rs3777623	0.87[CHB][hapmap]
rs3777625	0.87[CHB][hapmap]
rs6930840	0.87[CHB][hapmap]
rs7771614	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10948272	SLC35B2	cis	parietal	SCAN
rs10948272	MRPL2	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45985800-45991800	Weak transcription	Psoas Muscle	Psoas
2	chr6:45989600-45992400	Enhancers	Hela-S3	cervix
3	chr6:45990600-45992400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:45990800-45991800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:45991000-45991600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:45991000-45992400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:45991000-45992400	Enhancers	Liver	Liver
8	chr6:45991000-45992400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:45991200-45992400	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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