Variant report

Variant	rs10948775
Chromosome Location	chr6:53638315-53638316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10456672	0.80[AMR][1000 genomes]
rs10755766	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1076701	0.81[AMR][1000 genomes]
rs1076702	0.80[AMR][1000 genomes]
rs11758147	0.80[AMR][1000 genomes]
rs4314499	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4345397	0.81[AMR][1000 genomes]
rs4373352	0.81[AMR][1000 genomes]
rs4400206	0.80[AMR][1000 genomes]
rs4404762	0.81[AMR][1000 genomes]
rs4441952	0.80[AMR][1000 genomes]
rs4516937	0.81[AMR][1000 genomes]
rs4563705	0.81[AMR][1000 genomes]
rs4610551	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6903399	0.90[AMR][1000 genomes]
rs6908232	0.81[AMR][1000 genomes]
rs6921605	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6934324	0.80[AMR][1000 genomes]
rs7763482	0.80[AMR][1000 genomes]
rs9349685	0.81[AMR][1000 genomes]
rs9370233	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9382231	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9382232	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382235	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9382238	0.85[AMR][1000 genomes]
rs9382241	0.85[AMR][1000 genomes]
rs9382243	0.88[AMR][1000 genomes]
rs9382244	0.88[AMR][1000 genomes]
rs9382246	0.88[AMR][1000 genomes]
rs9382248	0.84[AMR][1000 genomes]
rs9382253	0.80[AMR][1000 genomes]
rs9382254	0.80[AMR][1000 genomes]
rs9382257	0.80[AMR][1000 genomes]
rs9395876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395878	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9395881	0.86[AMR][1000 genomes]
rs9474646	0.81[AMR][1000 genomes]
rs9474649	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1021506	chr6:53600338-53770482	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53632000-53639600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:53632200-53639000	Weak transcription	Gastric	stomach
3	chr6:53635800-53638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:53636400-53652800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:53637600-53656000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:53638000-53638400	Enhancers	Fetal Intestine Small	intestine

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