Variant report

Variant	rs10951558
Chromosome Location	chr7:38526375-38526376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12154302	0.93[EUR][1000 genomes]
rs1558617	0.93[EUR][1000 genomes]
rs17171359	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17171367	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17171377	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17171384	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17498899	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17499670	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17506922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861239	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs34057414	0.93[EUR][1000 genomes]
rs3735089	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs3778879	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs3778882	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3823594	0.89[CEU][hapmap]
rs41279585	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10951558	AMPH	cis	normal skin	skin_eQTL
rs10951558	AMPH	cis	Skin Sun Exposed Lower leg	GTEx
rs10951558	AMPH	cis	Nerve Tibial	GTEx
rs10951558	AMPH	cis	Adipose Subcutaneous	GTEx
rs10951558	AMPH	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
2	chr7:38502800-38533800	Weak transcription	Aorta	Aorta
3	chr7:38524000-38543400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:38524200-38545000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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