Variant report

Variant	rs10951613
Chromosome Location	chr7:39784804-39784805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39773034..39774546-chr7:39784465..39787003,2	K562	blood:
2	chr7:39761591..39763196-chr7:39784084..39786176,2	K562	blood:
3	chr7:39779586..39783810-chr7:39784294..39787112,4	K562	blood:
4	chr7:39784501..39786932-chr7:40060004..40061750,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188185	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2107707	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39774200-39786200	Weak transcription	Fetal Intestine Large	intestine
2	chr7:39774200-39788800	Weak transcription	HSMMtube	muscle
3	chr7:39774200-39790400	Weak transcription	Fetal Kidney	kidney
4	chr7:39774200-39793400	Weak transcription	Ovary	ovary
5	chr7:39774200-39807400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:39774400-39785200	Weak transcription	Brain Germinal Matrix	brain
7	chr7:39774400-39785600	Weak transcription	Brain Substantia Nigra	brain
8	chr7:39774400-39794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:39774400-39797600	Weak transcription	Thymus	Thymus
10	chr7:39774600-39785600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:39774600-39786000	Weak transcription	Fetal Thymus	thymus
12	chr7:39775400-39785600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:39775400-39785600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:39775600-39785600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:39775600-39788600	Weak transcription	NHLF	lung
16	chr7:39775800-39785400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:39775800-39785400	Weak transcription	Fetal Brain Female	brain
18	chr7:39775800-39785600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:39775800-39785600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr7:39775800-39785600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:39775800-39786200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:39775800-39786400	Weak transcription	Spleen	Spleen
23	chr7:39775800-39788600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:39775800-39789000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:39775800-39789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr7:39775800-39793400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:39775800-39796400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:39775800-39807000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:39775800-39811200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:39776000-39785400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:39776000-39785600	Weak transcription	Osteobl	bone
32	chr7:39776000-39785800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:39776000-39785800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:39776000-39793800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:39776200-39793800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:39776200-39794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:39776400-39785600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:39776600-39820400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:39776800-39790000	Weak transcription	Dnd41	blood
40	chr7:39777600-39785600	Weak transcription	A549	lung
41	chr7:39781800-39785200	Strong transcription	Fetal Stomach	stomach
42	chr7:39781800-39793400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:39782000-39785000	Strong transcription	GM12878-XiMat	blood
44	chr7:39782000-39785600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:39782200-39785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:39782200-39785600	Weak transcription	NHEK	skin
47	chr7:39782200-39786800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:39782400-39789200	Weak transcription	Aorta	Aorta
49	chr7:39782400-39790200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr7:39782400-39792800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links