Variant report

Variant	rs10951921
Chromosome Location	chr7:47719760-47719761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47719300..47720946-chr7:47732065..47734145,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10253479	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10951917	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10951919	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951920	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11771997	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4398813	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4418255	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4418256	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4428579	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4537224	0.94[ASN][1000 genomes]
rs6463431	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73105223	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7786687	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7792269	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7807659	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812217	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1024392	chr7:47707023-47758976	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1024027	chr7:47709936-47743485	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1028355	chr7:47715107-47758976	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47706000-47721600	Enhancers	Placenta	Placenta
2	chr7:47713200-47720600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:47717400-47720000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:47717400-47720400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:47717600-47720000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:47717600-47720000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:47717600-47721400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:47718000-47719800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:47718000-47720000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:47718000-47720400	Weak transcription	HepG2	liver
11	chr7:47718200-47723000	Weak transcription	HMEC	breast
12	chr7:47718600-47720800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:47718600-47721400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:47718600-47728000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:47718800-47719800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:47718800-47725600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:47719000-47720000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:47719000-47720400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:47719000-47720600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:47719400-47720000	Enhancers	Spleen	Spleen
21	chr7:47719400-47720400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:47719400-47721200	Enhancers	Fetal Intestine Large	intestine
23	chr7:47719400-47721200	Enhancers	Fetal Intestine Small	intestine
24	chr7:47719600-47720000	Enhancers	K562	blood
25	chr7:47719600-47720800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:47719600-47721200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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