Variant report

Variant	rs10952061
Chromosome Location	chr7:7601963-7601964
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7601559..7604327-chr7:8300528..8302351,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003147	Chromatin interaction
ENSG00000229970	Chromatin interaction
ENSG00000244239	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10227453	0.88[ASN][1000 genomes]
rs10236767	0.89[EUR][1000 genomes]
rs10486178	0.90[ASN][1000 genomes]
rs11767285	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11975180	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12532693	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12533006	0.89[EUR][1000 genomes]
rs13244586	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1544465	0.88[EUR][1000 genomes]
rs1544466	0.87[EUR][1000 genomes]
rs17151557	0.90[ASN][1000 genomes]
rs17168408	0.90[ASN][1000 genomes]
rs17168446	0.90[ASN][1000 genomes]
rs17168463	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17168516	0.90[ASN][1000 genomes]
rs1971649	0.83[EUR][1000 genomes]
rs2023999	0.90[ASN][1000 genomes]
rs2108066	0.91[ASN][1000 genomes]
rs2108069	0.89[EUR][1000 genomes]
rs2214842	0.90[ASN][1000 genomes]
rs2348337	0.88[EUR][1000 genomes]
rs2348338	0.81[EUR][1000 genomes]
rs28483212	0.90[ASN][1000 genomes]
rs28553401	0.90[ASN][1000 genomes]
rs3807856	0.86[EUR][1000 genomes]
rs3823842	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4720740	0.83[EUR][1000 genomes]
rs56412915	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60498098	0.90[ASN][1000 genomes]
rs6943655	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968507	0.89[EUR][1000 genomes]
rs6977450	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6977577	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6977800	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs720288	0.90[ASN][1000 genomes]
rs73674573	0.88[ASN][1000 genomes]
rs73674574	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73674578	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73674581	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73674582	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7459399	0.84[EUR][1000 genomes]
rs7779415	0.84[EUR][1000 genomes]
rs7796700	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv887470	chr7:7310023-7655094	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv887473	chr7:7497676-7604913	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv887474	chr7:7519603-7679644	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
10	nsv887475	chr7:7519603-7679644	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv887476	chr7:7519603-7680697	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
12	nsv887477	chr7:7531819-7810122	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
13	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
14	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7589400-7605800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:7590000-7606000	Weak transcription	Brain Substantia Nigra	brain
3	chr7:7590000-7606200	Weak transcription	Ovary	ovary
4	chr7:7590200-7605800	Weak transcription	Brain Anterior Caudate	brain
5	chr7:7590200-7605800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:7593800-7606000	Weak transcription	Right Atrium	heart
7	chr7:7595200-7603000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:7595200-7603600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:7595800-7605600	Weak transcription	Fetal Kidney	kidney
10	chr7:7596400-7603200	Weak transcription	Aorta	Aorta
11	chr7:7596800-7602800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:7597000-7603800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:7597000-7605400	Weak transcription	Lung	lung
14	chr7:7597200-7604200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:7597200-7606600	Weak transcription	Gastric	stomach
16	chr7:7597400-7603600	Weak transcription	Pancreas	Pancrea
17	chr7:7597800-7606000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:7599200-7605800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:7599600-7603000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:7600000-7606000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:7600800-7603600	Weak transcription	Fetal Intestine Large	intestine
22	chr7:7601600-7605000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:7601800-7603200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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