Variant report

Variant	rs10952301
Chromosome Location	chr7:150792271-150792272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150790537..150793410-chr7:150796885..150799076,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10085680	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10244332	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273337	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1036061	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1036062	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077122	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11766855	0.89[ASN][1000 genomes]
rs11769150	0.82[ASN][1000 genomes]
rs34104727	0.89[ASN][1000 genomes]
rs34308016	0.89[ASN][1000 genomes]
rs4236428	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4725389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725988	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4725989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725992	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4725993	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62490310	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62490311	0.80[EUR][1000 genomes]
rs6464129	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945607	0.84[EUR][1000 genomes]
rs6957724	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6970547	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6970773	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7385751	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs749320	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806979	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs891510	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
4	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
6	nsv889477	chr7:150731698-150837529	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
8	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv889480	chr7:150736382-150797581	Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
10	nsv465214	chr7:150751590-150822192	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
11	nsv609012	chr7:150751590-150822192	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
12	nsv609013	chr7:150751590-150832913	Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
13	nsv465215	chr7:150762871-150825087	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
14	nsv609014	chr7:150762871-150825087	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
15	nsv889481	chr7:150766799-150837529	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
16	nsv889482	chr7:150766799-150851566	Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150785000-150812000	Weak transcription	Aorta	Aorta
2	chr7:150786400-150808400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:150786600-150792600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:150786800-150799000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:150787000-150796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:150787000-150799400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:150787200-150792600	Enhancers	Adipose Nuclei	Adipose
8	chr7:150787200-150793000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:150787200-150793000	Weak transcription	HSMMtube	muscle
10	chr7:150787200-150793200	Weak transcription	Psoas Muscle	Psoas
11	chr7:150787200-150800600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:150787200-150801400	Weak transcription	NH-A	brain
13	chr7:150787400-150800000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:150787400-150807800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:150787800-150792400	Weak transcription	Ovary	ovary
16	chr7:150787800-150800000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:150787800-150801800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:150787800-150801800	Weak transcription	NHLF	lung
19	chr7:150788400-150800600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:150788600-150792400	Strong transcription	HepG2	liver
21	chr7:150788600-150807400	Weak transcription	Fetal Heart	heart
22	chr7:150789000-150795600	Strong transcription	Fetal Intestine Small	intestine
23	chr7:150789000-150796600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:150789000-150796800	Weak transcription	Stomach Mucosa	stomach
25	chr7:150789000-150798600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr7:150789000-150800200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:150789000-150801400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:150789000-150815400	Weak transcription	GM12878-XiMat	blood
29	chr7:150789200-150792400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:150789200-150796600	Weak transcription	Right Ventricle	heart
31	chr7:150789200-150801600	Weak transcription	Colonic Mucosa	Colon
32	chr7:150789200-150802400	Strong transcription	Fetal Stomach	stomach
33	chr7:150789400-150793600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr7:150789400-150801600	Weak transcription	Pancreas	Pancrea
35	chr7:150789400-150807800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr7:150789600-150796600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:150789600-150807000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:150789800-150792400	Weak transcription	Left Ventricle	heart
39	chr7:150789800-150793000	Weak transcription	Placenta	Placenta
40	chr7:150789800-150800600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:150789800-150806600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr7:150790000-150794600	Weak transcription	Right Atrium	heart
43	chr7:150790000-150797000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:150790000-150801800	Weak transcription	Osteobl	bone
45	chr7:150790000-150803400	Weak transcription	Liver	Liver
46	chr7:150790400-150801600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:150790400-150806200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:150790600-150793000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:150790800-150793200	Enhancers	Brain Anterior Caudate	brain
50	chr7:150790800-150793400	Enhancers	Brain Cingulate Gyrus	brain

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