Variant report

Variant	rs10952668
Chromosome Location	chr7:140143520-140143521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140143508..140145426-chr7:140152981..140155575,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11763850	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140126600-140148000	Weak transcription	Primary T cells from cord blood	blood
3	chr7:140133200-140154200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:140135600-140147600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:140135800-140148600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:140135800-140151000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:140135800-140151000	Weak transcription	Fetal Brain Female	brain
8	chr7:140135800-140156000	Weak transcription	NHEK	skin
9	chr7:140136200-140149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:140136600-140154600	Weak transcription	Fetal Brain Male	brain
11	chr7:140138800-140147600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:140139200-140151400	Weak transcription	Fetal Intestine Large	intestine
13	chr7:140139400-140151200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:140139400-140152400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:140139600-140149000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:140139800-140149800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:140140600-140151600	Weak transcription	Fetal Intestine Small	intestine
18	chr7:140140800-140148600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:140140800-140153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:140142000-140151600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:140142000-140154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:140143400-140143800	Weak transcription	Pancreas	Pancrea
23	chr7:140143400-140144000	Enhancers	HepG2	liver

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