Variant report

Variant	rs10953396
Chromosome Location	chr7:103572689-103572690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10953397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11760725	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11765701	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12533383	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12533834	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536011	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12705167	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12705169	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13240502	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62481172	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6960627	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6978991	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7792066	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv933391	chr7:103557392-103588539	Weak transcription Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv971218	chr7:103561948-103585213	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103556800-103574400	Weak transcription	HepG2	liver
2	chr7:103572200-103574000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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