Variant report

Variant	rs10953829
Chromosome Location	chr7:116522407-116522408
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116521486..116524179-chr7:116528178..116530411,2	K562	blood:
2	chr7:116501695..116504448-chr7:116520104..116523310,5	K562	blood:
3	chr7:116501242..116506265-chr7:116510058..116522773,18	MCF-7	breast:
4	chr7:116515132..116520352-chr7:116521244..116527932,11	K562	blood:

Variant related genes	Relation type
ENSG00000198898	Chromatin interaction
ENSG00000235945	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10487354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10487355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10487356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12533164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12533755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665952	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12669383	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12670056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12670264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12671827	0.92[EUR][1000 genomes]
rs12671828	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12672008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12673979	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12674017	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12706108	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12706109	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706110	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706112	0.96[EUR][1000 genomes]
rs12706115	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706120	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12706121	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706122	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12706123	0.82[EUR][1000 genomes]
rs13222845	0.92[EUR][1000 genomes]
rs13224082	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13228847	0.95[EUR][1000 genomes]
rs13239000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299441	0.96[EUR][1000 genomes]
rs2301649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3173936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3807999	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs4808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7808129	0.85[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9791492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116503800-116554400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:116504400-116528800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:116504400-116533000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:116504600-116540800	Weak transcription	Fetal Kidney	kidney
5	chr7:116505000-116525200	Weak transcription	NHDF-Ad	bronchial
6	chr7:116505000-116533600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:116505000-116537400	Weak transcription	Brain Germinal Matrix	brain
8	chr7:116506000-116529200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:116506000-116554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:116507600-116528000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:116511200-116528800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:116511400-116525400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:116511400-116528000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:116511400-116554600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:116512000-116545400	Weak transcription	NHLF	lung
16	chr7:116512200-116529400	Weak transcription	Osteobl	bone
17	chr7:116513200-116528400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:116513600-116528600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:116514000-116525400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:116514200-116528200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:116514400-116524600	Weak transcription	Placenta	Placenta
22	chr7:116514400-116528000	Weak transcription	HSMM	muscle
23	chr7:116514400-116530600	Weak transcription	HMEC	breast
24	chr7:116514400-116531600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:116514600-116525400	Weak transcription	Thymus	Thymus
26	chr7:116514600-116525600	Weak transcription	A549	lung
27	chr7:116514600-116537800	Weak transcription	NHEK	skin
28	chr7:116514800-116526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:116515200-116525400	Weak transcription	Spleen	Spleen
30	chr7:116515400-116559200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:116516000-116524600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:116516800-116525400	Weak transcription	Fetal Thymus	thymus
33	chr7:116516800-116526600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:116516800-116551200	Weak transcription	Brain Angular Gyrus	brain
35	chr7:116517000-116523400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:116517000-116526400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:116517000-116528000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:116517000-116529200	Weak transcription	NH-A	brain
39	chr7:116517200-116523600	Weak transcription	Dnd41	blood
40	chr7:116517200-116524400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr7:116517200-116524400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:116517200-116525000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:116517200-116525400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:116517200-116525400	Weak transcription	Aorta	Aorta
45	chr7:116517200-116525400	Weak transcription	Fetal Stomach	stomach
46	chr7:116517200-116525400	Weak transcription	Lung	lung
47	chr7:116517200-116528000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:116517200-116528200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:116517200-116531000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:116517200-116531000	Weak transcription	Hela-S3	cervix

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