Variant report

Variant	rs10954031
Chromosome Location	chr7:124136552-124136553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124136314..124138720-chr7:124182818..124185016,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10954032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772423	0.89[EUR][1000 genomes]
rs11772431	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11973566	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12154450	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12154464	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12155104	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13226152	0.90[ASN][1000 genomes]
rs17385987	0.85[EUR][1000 genomes]
rs1860145	0.89[EUR][1000 genomes]
rs1860147	0.89[EUR][1000 genomes]
rs34172682	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35138317	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35473020	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36198425	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141005	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59834974	0.85[EUR][1000 genomes]
rs60235107	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs60598740	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62474081	0.85[EUR][1000 genomes]
rs62474086	0.85[EUR][1000 genomes]
rs62474097	0.88[EUR][1000 genomes]
rs62474124	0.89[EUR][1000 genomes]
rs62474132	0.89[EUR][1000 genomes]
rs62474136	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62474137	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62474138	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62474139	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62474141	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474143	0.91[EUR][1000 genomes]
rs62474144	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62474145	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6651123	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6948445	0.88[EUR][1000 genomes]
rs6973149	0.85[EUR][1000 genomes]
rs6979375	0.89[EUR][1000 genomes]
rs7455136	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7796239	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795113	chr7:123885477-124188665	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	esv1808414	chr7:123957376-124188665	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2762702	chr7:124121566-124149797	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124131400-124137600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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