Variant report

Variant	rs10954158
Chromosome Location	chr7:127114139-127114140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127113557..127116124-chr7:127116757..127118355,2	K562	blood:
2	chr7:126920847..126923556-chr7:127113482..127116443,2	K562	blood:

Variant related genes	Relation type
ENSG00000226770	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10435404	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10487486	0.84[CHB][hapmap]
rs10954157	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11975300	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs11982078	0.89[CHB][hapmap]
rs12666432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12671806	0.91[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12673058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13220954	0.84[CHB][hapmap]
rs13243596	0.83[CHB][hapmap];0.81[CHD][hapmap]
rs13309123	0.84[CHB][hapmap]
rs13309424	0.84[CHB][hapmap]
rs1419409	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs17656920	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs17656985	0.84[CHB][hapmap]
rs1894722	0.84[CHB][hapmap]
rs4731365	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61544985	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468944	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6966790	0.84[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10954158	ASB15	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127097400-127116000	Weak transcription	Pancreas	Pancrea
2	chr7:127111000-127125000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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