Variant report

Variant	rs10954220
Chromosome Location	chr7:128778904-128778905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55722779	1.00[AMR][1000 genomes]
rs57426530	1.00[AMR][1000 genomes]
rs6962821	0.91[AFR][1000 genomes]
rs73721559	1.00[AMR][1000 genomes]
rs73721560	1.00[AMR][1000 genomes]
rs968367	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829719	chr7:128602992-128810971	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv831127	chr7:128716256-128874691	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv539121	chr7:128760926-128791665	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128763200-128784200	Weak transcription	Right Atrium	heart
2	chr7:128767800-128781200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128774400-128779000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:128775400-128784000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:128777400-128779400	Enhancers	Primary B cells from cord blood	blood
6	chr7:128777400-128780600	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:128778400-128783800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:128778400-128783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:128778600-128783600	Weak transcription	GM12878-XiMat	blood
10	chr7:128778600-128784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:128778800-128779000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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