Variant report

Variant	rs10955255
Chromosome Location	chr8:102536405-102536406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102535633..102538629-chr8:102574811..102576314,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10505010	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs13255911	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13263539	0.84[CHB][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs17397776	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs17397811	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2127034	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2127035	0.84[CHB][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs922466	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10955255	DCAF13	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102527000-102537800	Weak transcription	Placenta	Placenta
2	chr8:102527000-102551200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:102527000-102551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:102527200-102555400	Weak transcription	Fetal Intestine Small	intestine
5	chr8:102527200-102556800	Weak transcription	Fetal Intestine Large	intestine
6	chr8:102527800-102540600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:102527800-102541600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:102528000-102542000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:102528000-102542200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:102528400-102550600	Weak transcription	Esophagus	oesophagus
11	chr8:102533600-102538000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:102533800-102538000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:102533800-102538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:102533800-102538000	Weak transcription	NHEK	skin
15	chr8:102533800-102541600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:102533800-102550200	Weak transcription	HMEC	breast
17	chr8:102533800-102551400	Weak transcription	Pancreas	Pancrea
18	chr8:102535400-102536800	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr8:102536000-102550200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:102536400-102536800	Enhancers	A549	lung
21	chr8:102536400-102538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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