Variant report

Variant	rs10955263
Chromosome Location	chr8:102627528-102627529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102497120..102519676-chr8:102608888..102627613,87	MCF-7	breast:
2	chr8:102504779..102507162-chr8:102627473..102630274,3	MCF-7	breast:
3	chr8:102626664..102629265-chr8:102631491..102634297,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10955262	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10955264	0.87[ASN][1000 genomes]
rs12546518	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12681226	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1357984	0.81[ASN][1000 genomes]
rs2032118	0.90[ASN][1000 genomes]
rs2032119	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032120	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521662	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734029	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734552	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734556	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs682769	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757285	chr8:102609474-102649681	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759635	chr8:102609474-102649681	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2761235	chr8:102613079-102646059	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3511009	chr8:102619876-102627874	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3511013	chr8:102620226-102627824	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv2421697	chr8:102620606-102627912	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv611817	chr8:102622590-102627912	Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv611818	chr8:102623113-102627912	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:102616800-102643800	Weak transcription	Gastric	stomach
4	chr8:102618000-102640800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:102619200-102631800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:102619600-102631800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:102619800-102656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:102620800-102637800	Weak transcription	HUVEC	blood vessel
9	chr8:102621200-102635800	Weak transcription	Pancreas	Pancrea
10	chr8:102623400-102632000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:102623400-102635200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:102623800-102631600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:102623800-102631800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:102624000-102632200	Weak transcription	Placenta	Placenta
15	chr8:102624200-102635400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:102624600-102635200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:102624800-102632800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:102625200-102632000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:102625400-102630800	Weak transcription	Hela-S3	cervix
20	chr8:102625400-102632000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:102625400-102635400	Weak transcription	Esophagus	oesophagus
22	chr8:102625400-102635400	Weak transcription	HMEC	breast
23	chr8:102625800-102628600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:102625800-102628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:102626000-102631600	Weak transcription	NHEK	skin
26	chr8:102626600-102628400	Enhancers	Fetal Brain Male	brain
27	chr8:102626800-102627600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:102626800-102627600	Enhancers	Fetal Kidney	kidney
29	chr8:102626800-102627800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr8:102626800-102628000	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr8:102627000-102627600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:102627000-102627800	Enhancers	Fetal Intestine Large	intestine
33	chr8:102627000-102627800	Enhancers	Stomach Mucosa	stomach
34	chr8:102627000-102628000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:102627000-102628200	Enhancers	Fetal Intestine Small	intestine
36	chr8:102627200-102627600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:102627200-102627600	Enhancers	Colon Smooth Muscle	Colon
38	chr8:102627200-102627600	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr8:102627400-102628200	Strong transcription	Placenta Amnion	Placenta Amnion

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