Variant report

Variant	rs10955572
Chromosome Location	chr8:112240591-112240592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12156391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12676370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12680038	0.93[ASN][1000 genomes]
rs12680509	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12682144	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13249608	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13258418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263317	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13268897	0.95[ASN][1000 genomes]
rs13282566	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1427181	0.93[ASN][1000 genomes]
rs1427190	0.86[ASN][1000 genomes]
rs16881787	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16881844	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2433663	0.86[ASN][1000 genomes]
rs2433665	0.86[ASN][1000 genomes]
rs2512404	0.86[ASN][1000 genomes]
rs3021375	0.89[ASN][1000 genomes]
rs4419838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4455867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4620315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469345	0.95[ASN][1000 genomes]
rs6985509	0.89[ASN][1000 genomes]
rs7835727	0.95[ASN][1000 genomes]
rs7843740	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs890564	0.86[ASN][1000 genomes]
rs890565	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv891311	chr8:112088322-112604086	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1034184	chr8:112171949-112274721	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112239800-112241000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:112239800-112241000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:112239800-112242200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:112240000-112241000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:112240000-112241200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:112240400-112242200	Enhancers	HUES6 Cell Line	embryonic stem cell

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