Variant report

Variant	rs10955840
Chromosome Location	chr8:118928067-118928068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17430694	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17430728	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17430749	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17453119	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17504547	0.82[AFR][1000 genomes]
rs55712037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73322061	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv891411	chr8:118891896-118942698	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118919200-118933200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:118922800-118932800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:118922800-118934800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:118923200-118933000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:118923800-118930000	Weak transcription	Pancreas	Pancrea
6	chr8:118923800-118933800	Weak transcription	Fetal Stomach	stomach
7	chr8:118924000-118932800	Weak transcription	Ovary	ovary
8	chr8:118924000-118933000	Weak transcription	Lung	lung
9	chr8:118926000-118928800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:118926000-118931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:118926000-118932800	Weak transcription	HSMMtube	muscle
12	chr8:118926400-118928200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:118926400-118928400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:118926400-118928400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:118926400-118928400	Weak transcription	A549	lung
16	chr8:118926400-118929800	Weak transcription	Aorta	Aorta
17	chr8:118926400-118930800	Weak transcription	NHLF	lung
18	chr8:118926400-118932200	Weak transcription	NHEK	skin
19	chr8:118926400-118932600	Weak transcription	HSMM	muscle
20	chr8:118926400-118932600	Weak transcription	NH-A	brain
21	chr8:118926600-118928200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:118926600-118928400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:118926600-118928400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:118927000-118935000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:118927200-118932600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:118927400-118928400	Weak transcription	Osteobl	bone
27	chr8:118927400-118932800	Weak transcription	Liver	Liver
28	chr8:118927600-118928600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:118927800-118928200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:118927800-118928800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:118927800-118928800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:118927800-118928800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:118928000-118928200	Enhancers	NHDF-Ad	bronchial
34	chr8:118928000-118928400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:118928000-118928600	Enhancers	Primary T cells from cord blood	blood
36	chr8:118928000-118928600	Flanking Active TSS	GM12878-XiMat	blood

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