Variant report

Variant	rs10955849
Chromosome Location	chr8:119035010-119035011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1037693	0.80[EUR][1000 genomes]
rs11562667	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13261684	0.80[EUR][1000 genomes]
rs17453854	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2126630	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2279121	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4876398	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119021800-119036000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:119024200-119038000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:119024800-119036000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:119024800-119036600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:119024800-119037000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:119025000-119038200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:119029000-119036000	Weak transcription	Right Ventricle	heart
8	chr8:119029000-119038200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:119029200-119036000	Weak transcription	Esophagus	oesophagus
10	chr8:119030000-119036000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:119030000-119040600	Enhancers	Fetal Intestine Small	intestine
12	chr8:119030200-119035600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:119030200-119035600	Weak transcription	Left Ventricle	heart
14	chr8:119030200-119037400	Weak transcription	Pancreas	Pancrea
15	chr8:119030600-119035200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:119030600-119035400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:119030600-119036000	Weak transcription	Fetal Brain Female	brain
18	chr8:119030800-119035400	Weak transcription	Fetal Heart	heart
19	chr8:119030800-119035600	Weak transcription	Ovary	ovary
20	chr8:119030800-119036000	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:119030800-119037000	Weak transcription	Gastric	stomach
22	chr8:119030800-119037200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:119031200-119035200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:119031400-119035600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:119031800-119035600	Weak transcription	Psoas Muscle	Psoas
26	chr8:119032000-119035200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:119032000-119035400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:119032000-119035600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:119032000-119036000	Weak transcription	Stomach Mucosa	stomach
30	chr8:119032000-119036200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr8:119032000-119037000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:119032200-119035200	Weak transcription	Adipose Nuclei	Adipose
33	chr8:119032200-119035200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:119032200-119035400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:119032200-119035600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:119032200-119035600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:119032200-119036000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:119032400-119035600	Weak transcription	HSMM	muscle
39	chr8:119032400-119036800	Weak transcription	HSMMtube	muscle
40	chr8:119032400-119043200	Weak transcription	GM12878-XiMat	blood
41	chr8:119032600-119035400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr8:119033000-119035600	Weak transcription	Right Atrium	heart
43	chr8:119033000-119035600	Weak transcription	NH-A	brain
44	chr8:119033200-119035200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:119033200-119035200	Weak transcription	Fetal Lung	lung
46	chr8:119033200-119035200	Weak transcription	HUVEC	blood vessel
47	chr8:119033200-119036000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr8:119033200-119036600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:119033200-119040200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:119033600-119035400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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