Variant report

Variant	rs10955881
Chromosome Location	chr8:119440034-119440035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10101386	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10282819	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10283133	0.80[EUR][1000 genomes]
rs10955878	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10955879	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11773916	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11777111	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11784091	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11994945	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12155913	0.80[EUR][1000 genomes]
rs12156188	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12156430	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12679866	0.81[EUR][1000 genomes]
rs13248112	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13251051	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13251354	0.81[ASN][1000 genomes]
rs13251719	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13253470	0.81[ASN][1000 genomes]
rs13253764	0.81[ASN][1000 genomes]
rs13255144	0.81[EUR][1000 genomes]
rs13260753	0.81[ASN][1000 genomes]
rs34696908	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4242578	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4242579	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4375037	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4548208	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4601348	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4626637	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4631494	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4876417	0.81[EUR][1000 genomes]
rs4876832	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4876833	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4876835	0.81[EUR][1000 genomes]
rs4876836	0.81[EUR][1000 genomes]
rs59298785	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61636365	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62533427	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7812733	0.80[EUR][1000 genomes]
rs7812880	0.81[EUR][1000 genomes]
rs7813395	0.81[EUR][1000 genomes]
rs7831361	0.81[EUR][1000 genomes]
rs7831501	0.81[EUR][1000 genomes]
rs7838464	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9642841	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9643128	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9643129	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9643130	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119434800-119451800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:119438000-119446400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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