Variant report

Variant	rs10955890
Chromosome Location	chr8:119597202-119597203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73319362	0.81[ASN][1000 genomes]
rs9643131	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv6362	chr8:119554736-119599269	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119585800-119602400	Weak transcription	Pancreas	Pancrea
2	chr8:119586000-119599200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:119587400-119599600	Weak transcription	Left Ventricle	heart
4	chr8:119589200-119598000	Weak transcription	Brain Angular Gyrus	brain
5	chr8:119590000-119598000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:119590600-119599200	Weak transcription	GM12878-XiMat	blood
7	chr8:119595000-119602600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:119596600-119597400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:119596800-119597400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:119597000-119597400	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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