Variant report

Variant	rs10955909
Chromosome Location	chr8:119908476-119908477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11573806	1.00[MEX][hapmap]
rs11573900	1.00[MEX][hapmap]
rs11573962	0.86[AMR][1000 genomes]
rs12375328	1.00[MEX][hapmap]
rs1804854	1.00[MEX][hapmap]
rs4520195	1.00[MEX][hapmap]
rs6995670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815884	1.00[MEX][hapmap]
rs7833877	1.00[MEX][hapmap]
rs882763	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119908200-119910000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:119908200-119910200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:119908200-119910400	Enhancers	NHLF	lung
4	chr8:119908200-119910600	Enhancers	Hela-S3	cervix
5	chr8:119908200-119915200	Enhancers	Fetal Intestine Small	intestine
6	chr8:119908400-119909200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:119908400-119909400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:119908400-119909800	Enhancers	HSMM	muscle
9	chr8:119908400-119910000	Enhancers	Osteobl	bone
10	chr8:119908400-119910200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:119908400-119910200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:119908400-119910200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:119908400-119910200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:119908400-119910200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:119908400-119910200	Enhancers	NHDF-Ad	bronchial
16	chr8:119908400-119910200	Enhancers	NHEK	skin
17	chr8:119908400-119910600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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