Variant report

Variant	rs10955974
Chromosome Location	chr8:121581812-121581813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs36043164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4297067	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4451342	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62526664	0.84[AMR][1000 genomes]
rs67339289	0.80[AMR][1000 genomes]
rs6997783	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7815260	0.80[AMR][1000 genomes]
rs7834651	0.84[AMR][1000 genomes]
rs7842050	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1021757	chr8:121501179-121620441	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv539740	chr8:121501179-121620441	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121556200-121586400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121557800-121597400	Weak transcription	Osteobl	bone
3	chr8:121560400-121586800	Weak transcription	Fetal Stomach	stomach
4	chr8:121560600-121597000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:121561000-121591600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:121561200-121582600	Weak transcription	Fetal Intestine Large	intestine
7	chr8:121561200-121585200	Weak transcription	Fetal Kidney	kidney
8	chr8:121561200-121586000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:121561200-121586400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:121561200-121586800	Weak transcription	Gastric	stomach
11	chr8:121561200-121586800	Weak transcription	Lung	lung
12	chr8:121561200-121596400	Weak transcription	Pancreas	Pancrea
13	chr8:121561400-121582600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:121561400-121583000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr8:121561400-121585400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:121561400-121586000	Weak transcription	NHLF	lung
17	chr8:121561400-121586400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:121561800-121583000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:121561800-121585600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr8:121562200-121582800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:121568400-121586400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:121568600-121582600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr8:121568600-121582600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:121568600-121585400	Weak transcription	Primary B cells from cord blood	blood
25	chr8:121568600-121586200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr8:121568600-121586800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:121569800-121582400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:121569800-121586200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:121570200-121582800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:121570200-121582800	Weak transcription	Liver	Liver
31	chr8:121570200-121584400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:121570200-121585200	Weak transcription	Primary T cells from cord blood	blood
33	chr8:121572400-121592000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:121575200-121592800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:121575400-121585800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:121575600-121597000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:121575800-121582000	Weak transcription	HSMMtube	muscle
38	chr8:121575800-121582200	Weak transcription	Psoas Muscle	Psoas
39	chr8:121575800-121587400	Weak transcription	NHDF-Ad	bronchial
40	chr8:121576000-121582800	Weak transcription	HSMM	muscle
41	chr8:121577600-121589000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr8:121578800-121586200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:121579600-121587400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr8:121580400-121587800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:121580400-121593000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr8:121581000-121592400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr8:121581000-121592400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr8:121581200-121586400	Weak transcription	Aorta	Aorta
49	chr8:121581400-121593600	Strong transcription	HepG2	liver
50	chr8:121581600-121582000	Enhancers	Fetal Muscle Leg	muscle

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