Variant report

Variant	rs10956143
Chromosome Location	chr8:124678224-124678225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124552549..124555263-chr8:124677542..124680489,3	MCF-7	breast:
2	chr8:124664356..124666128-chr8:124675755..124678627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156804	Chromatin interaction
ENSG00000175946	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10505438	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10505439	0.90[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs16898635	1.00[MEX][hapmap]
rs16898685	0.82[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16898686	0.82[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16898687	0.86[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs16898689	0.86[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs16898691	0.82[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4367519	0.82[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56737136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58763139	0.83[ASN][1000 genomes]
rs61264957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518569	0.87[ASN][1000 genomes]
rs66970129	0.83[ASN][1000 genomes]
rs72711231	0.80[ASN][1000 genomes]
rs72711243	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72711245	0.93[ASN][1000 genomes]
rs72711246	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72711249	0.95[ASN][1000 genomes]
rs72713110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9642868	0.80[ASN][1000 genomes]
rs9643183	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124666800-124678600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:124668400-124680800	Weak transcription	Fetal Heart	heart
3	chr8:124670400-124678400	Weak transcription	Right Atrium	heart
4	chr8:124671000-124681000	Weak transcription	Brain Substantia Nigra	brain
5	chr8:124671200-124681800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:124671400-124681000	Weak transcription	HSMM	muscle
7	chr8:124671800-124681000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:124673400-124684200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:124674400-124680200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr8:124675000-124680400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:124675000-124680400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:124675200-124680600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:124675200-124680600	Weak transcription	Osteobl	bone
14	chr8:124675200-124680800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:124676200-124678400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:124676200-124689800	Weak transcription	Esophagus	oesophagus
17	chr8:124676800-124680000	Enhancers	Psoas Muscle	Psoas
18	chr8:124676800-124681800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:124677000-124681600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:124677600-124679000	Enhancers	Aorta	Aorta
21	chr8:124678200-124678400	Enhancers	Brain Angular Gyrus	brain
22	chr8:124678200-124678800	Enhancers	Fetal Muscle Leg	muscle
23	chr8:124678200-124678800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links