Variant report

Variant	rs10956197
Chromosome Location	chr8:125712420-125712421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125597468..125600069-chr8:125711742..125713559,2	MCF-7	breast:
2	chr8:125710029..125712501-chr8:125825729..125827888,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10090511	0.83[CEU][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs10956195	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543812	0.87[ASN][1000 genomes]
rs2116082	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857954	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62530739	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6985856	0.86[ASN][1000 genomes]
rs6986014	0.90[JPT][hapmap]
rs6998715	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	esv1795075	chr8:125692343-125713791	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125701000-125721400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:125701600-125713200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:125701600-125713800	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:125701600-125717000	Weak transcription	Thymus	Thymus
5	chr8:125701800-125713400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:125701800-125714800	Weak transcription	NHEK	skin
7	chr8:125702600-125730800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:125702800-125714800	Weak transcription	Fetal Kidney	kidney
9	chr8:125702800-125721400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:125702800-125721400	Weak transcription	Fetal Lung	lung
11	chr8:125703000-125720600	Weak transcription	Fetal Thymus	thymus
12	chr8:125703400-125712600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:125704800-125716600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr8:125705000-125722200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:125705400-125713200	Weak transcription	Colonic Mucosa	Colon
16	chr8:125705600-125713800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:125705600-125720000	Weak transcription	Lung	lung
18	chr8:125706000-125719000	Weak transcription	Esophagus	oesophagus
19	chr8:125706600-125720800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:125706800-125715600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:125706800-125720400	Weak transcription	Stomach Mucosa	stomach
22	chr8:125707400-125721200	Weak transcription	Primary T cells from cord blood	blood
23	chr8:125708000-125716400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:125708000-125716400	Strong transcription	Liver	Liver
25	chr8:125710000-125713400	Strong transcription	Primary B cells from cord blood	blood
26	chr8:125710200-125713600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr8:125710200-125716600	Strong transcription	Fetal Intestine Large	intestine
28	chr8:125710400-125714800	Enhancers	Brain Substantia Nigra	brain
29	chr8:125710400-125716600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:125710400-125716800	Strong transcription	HepG2	liver
31	chr8:125710800-125713800	Weak transcription	HUVEC	blood vessel
32	chr8:125710800-125714400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:125710800-125716600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:125711200-125714400	Enhancers	Brain Cingulate Gyrus	brain
35	chr8:125711200-125716400	Strong transcription	Placenta	Placenta
36	chr8:125711400-125712800	Enhancers	Pancreas	Pancrea
37	chr8:125711400-125713400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:125711400-125714000	Enhancers	NHDF-Ad	bronchial
39	chr8:125711600-125714200	Enhancers	Right Ventricle	heart
40	chr8:125711600-125714400	Enhancers	Brain Germinal Matrix	brain
41	chr8:125711600-125715000	Enhancers	Psoas Muscle	Psoas
42	chr8:125711600-125718400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr8:125711800-125713400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr8:125711800-125713600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr8:125711800-125714600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:125711800-125714600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:125711800-125714600	Enhancers	Brain Hippocampus Middle	brain
48	chr8:125711800-125720200	Weak transcription	K562	blood
49	chr8:125711800-125721400	Weak transcription	Osteobl	bone
50	chr8:125712000-125712600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links