Variant report

Variant	rs10956526
Chromosome Location	chr8:131467319-131467320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131464873..131467806-chr8:131470605..131472782,2	K562	blood:
2	chr8:131454459..131461089-chr8:131462437..131468873,11	MCF-7	breast:
3	chr8:131432091..131434122-chr8:131465093..131468070,2	MCF-7	breast:
4	chr8:131464964..131467866-chr8:131510024..131511695,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10103132	0.80[JPT][hapmap]
rs868104	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131459000-131468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:131459200-131468200	Weak transcription	Fetal Heart	heart
3	chr8:131461400-131470000	Weak transcription	HMEC	breast
4	chr8:131462000-131468600	Weak transcription	NHLF	lung
5	chr8:131462200-131468800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:131464400-131468600	Weak transcription	NHDF-Ad	bronchial
7	chr8:131464400-131468800	Weak transcription	HSMM	muscle
8	chr8:131464800-131468600	Weak transcription	NH-A	brain
9	chr8:131464800-131468600	Weak transcription	Osteobl	bone
10	chr8:131464800-131470000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:131465400-131486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:131465800-131469800	Weak transcription	Fetal Lung	lung
13	chr8:131466000-131468800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:131466000-131469600	Weak transcription	Fetal Stomach	stomach
15	chr8:131466000-131476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:131466200-131468800	Weak transcription	Brain Germinal Matrix	brain
17	chr8:131466200-131469600	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:131466200-131469800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:131466400-131468600	Weak transcription	Placenta	Placenta
20	chr8:131466400-131470000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links