Variant report
| Variant | rs10956799 |
|---|---|
| Chromosome Location | chr8:92283331-92283332 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11990790 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11993280 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11995390 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11995427 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57042938 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694603 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694606 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694607 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694610 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694611 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694622 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
