Variant report

Variant	rs10956944
Chromosome Location	chr8:96282926-96282927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:96281374-96283039	MCF10A-Er-Src	breast:	n/a	chr8:96281719-96281735 chr8:96281536-96281545
2	JUND	chr8:96280698-96283117	K562	blood:	n/a	n/a
3	SREBP2	chr8:96280774-96283681	GM12878	blood:	n/a	n/a
4	FOXA1	chr8:96282837-96283170	HepG2	liver:	n/a	n/a
5	TBP	chr8:96280766-96283023	Hela-S3	cervix:	n/a	n/a
6	BACH1	chr8:96282858-96283039	K562	blood:	n/a	n/a
7	MAFK	chr8:96282669-96282960	HepG2	liver:	n/a	n/a
8	POLR2A	chr8:96280741-96283112	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96111950..96115004-chr8:96279819..96283605,3	MCF-7	breast:
2	chr8:96140207..96143129-chr8:96281545..96283235,2	MCF-7	breast:
3	chr8:95651016..95653604-chr8:96280429..96282986,2	MCF-7	breast:
4	chr8:96262492..96264147-chr8:96281511..96283438,2	MCF-7	breast:
5	chr8:95834579..95836869-chr8:96281817..96284598,2	K562	blood:
6	chr8:95907099..95910081-chr8:96279389..96285203,6	K562	blood:
7	chr8:96282451..96284903-chr8:96296240..96298528,2	K562	blood:
8	chr8:96144909..96147734-chr8:96280323..96283069,4	K562	blood:
9	chr8:95835507..95837268-chr8:96280531..96283343,2	MCF-7	breast:
10	chr8:95907501..95911346-chr8:96279945..96283030,5	MCF-7	breast:
11	chr8:96082478..96088281-chr8:96279501..96283230,8	MCF-7	breast:
12	chr8:96266342..96268440-chr8:96282035..96284401,2	K562	blood:
13	chr2:97521965..97524958-chr8:96280956..96282974,2	MCF-7	breast:

No data

Variant related genes	Relation type
C8orf37	TF binding region
ENSG00000156170	Chromatin interaction
ENSG00000163126	Chromatin interaction
ENSG00000261437	Chromatin interaction
ENSG00000213337	Chromatin interaction
ENSG00000104413	Chromatin interaction
ENSG00000175305	Chromatin interaction
ENSG00000245080	Chromatin interaction
ENSG00000175895	Chromatin interaction
ENSG00000164941	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10109660	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13270004	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17731290	1.00[MEX][hapmap]
rs28380532	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28513820	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28718377	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28721532	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35214106	0.98[ASN][1000 genomes]
rs3927027	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4308702	0.82[CHB][hapmap]
rs55640150	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56099605	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62522659	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62524386	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62524387	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62524388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62524392	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62524394	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62524401	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96280400-96283000	Active TSS	H1 Cell Line	embryonic stem cell
2	chr8:96280400-96283000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:96280400-96283000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr8:96280400-96283000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr8:96280400-96283000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:96280400-96283200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:96280400-96283200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:96280400-96283200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr8:96280600-96283000	Active TSS	NHDF-Ad	bronchial
10	chr8:96280800-96283000	Active TSS	Fetal Brain Male	brain
11	chr8:96280800-96283000	Active TSS	Thymus	Thymus
12	chr8:96280800-96283000	Active TSS	K562	blood
13	chr8:96280800-96283200	Active TSS	Hela-S3	cervix
14	chr8:96282200-96283000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr8:96282200-96283000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:96282200-96283400	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr8:96282200-96283400	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr8:96282200-96283400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr8:96282400-96283000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr8:96282400-96283400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:96282400-96283400	Enhancers	Small Intestine	intestine
22	chr8:96282400-96285600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:96282600-96283000	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr8:96282600-96283000	Enhancers	Brain Substantia Nigra	brain
25	chr8:96282600-96283000	Active TSS	HepG2	liver
26	chr8:96282600-96283000	Flanking Active TSS	Osteobl	bone
27	chr8:96282600-96283200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:96282600-96283200	Flanking Active TSS	GM12878-XiMat	blood
29	chr8:96282600-96283200	Flanking Active TSS	HMEC	breast
30	chr8:96282600-96283400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:96282600-96283400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr8:96282800-96283000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:96282800-96283000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:96282800-96283000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr8:96282800-96283000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:96282800-96283000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr8:96282800-96283000	Enhancers	Primary B cells from cord blood	blood
38	chr8:96282800-96283000	Active TSS	Adipose Nuclei	Adipose
39	chr8:96282800-96283000	Enhancers	Fetal Thymus	thymus
40	chr8:96282800-96283200	Enhancers	H9 Cell Line	embryonic stem cell
41	chr8:96282800-96283200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr8:96282800-96283200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr8:96282800-96283200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:96282800-96283200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr8:96282800-96283200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:96282800-96283200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr8:96282800-96283200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr8:96282800-96283200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:96282800-96283200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:96282800-96283200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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