Variant report

Variant	rs10958371
Chromosome Location	chr8:54439247-54439248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10504154	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10958372	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776806	0.88[CEU][hapmap];0.92[ASN][1000 genomes]
rs11778924	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541575	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279206	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13280807	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17361507	0.85[CEU][hapmap]
rs1904072	0.84[CEU][hapmap]
rs6473842	0.85[CEU][hapmap]
rs7833232	0.92[CEU][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10958371	RP11-1081M5.2	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54436400-54441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:54437200-54441800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:54437200-54441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:54437400-54441600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:54437600-54440400	Weak transcription	Osteobl	bone
6	chr8:54437600-54441200	Weak transcription	HMEC	breast
7	chr8:54437600-54441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:54437800-54440400	Weak transcription	Fetal Heart	heart
9	chr8:54437800-54441800	Weak transcription	Esophagus	oesophagus
10	chr8:54437800-54441800	Weak transcription	Ovary	ovary
11	chr8:54438000-54440400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:54438800-54440200	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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