Variant report

Variant	rs10958736
Chromosome Location	chr8:42918890-42918891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:42909926..42914066-chr8:42914793..42919017,7	MCF-7	breast:
2	chr8:42915452..42917620-chr8:42917679..42921243,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168522	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10086958	0.81[ASN][1000 genomes]
rs10095511	0.80[CEU][hapmap];0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs10098954	0.84[CHB][hapmap]
rs10099064	0.84[CHB][hapmap]
rs10101649	0.84[CHB][hapmap]
rs10107370	0.81[ASN][1000 genomes]
rs10109426	0.81[ASN][1000 genomes]
rs10110087	0.84[CHB][hapmap]
rs10111452	0.87[ASN][1000 genomes]
rs10111782	0.84[CHB][hapmap]
rs10435641	0.86[ASN][1000 genomes]
rs10448065	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs10808963	0.86[ASN][1000 genomes]
rs10958737	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10958738	0.87[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs10958739	0.86[ASN][1000 genomes]
rs10958740	0.81[ASN][1000 genomes]
rs1129987	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11774010	0.81[ASN][1000 genomes]
rs11781737	0.85[ASN][1000 genomes]
rs11986681	0.80[CEU][hapmap]
rs11987795	0.87[ASN][1000 genomes]
rs12056606	0.86[ASN][1000 genomes]
rs12545323	0.84[CHB][hapmap]
rs12549718	0.85[ASN][1000 genomes]
rs13251524	0.81[CEU][hapmap]
rs13256745	0.86[ASN][1000 genomes]
rs13257298	0.80[CEU][hapmap]
rs13261180	0.92[CHB][hapmap];0.80[CHD][hapmap];0.88[ASN][1000 genomes]
rs1648119	0.81[CHD][hapmap]
rs1648121	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1825011	0.84[CHB][hapmap];0.87[CHD][hapmap]
rs1904815	0.84[CHB][hapmap];0.88[CHD][hapmap]
rs1966995	0.83[CHB][hapmap]
rs1966996	0.82[CHB][hapmap]
rs2042674	0.83[ASN][1000 genomes]
rs2127705	0.84[CHB][hapmap]
rs2376489	0.88[ASN][1000 genomes]
rs2376490	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2692077	0.89[AMR][1000 genomes]
rs28626408	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34826093	0.84[ASN][1000 genomes]
rs35252795	0.80[CEU][hapmap]
rs3739431	0.87[ASN][1000 genomes]
rs3867147	0.84[ASN][1000 genomes]
rs4236927	0.91[CHD][hapmap];0.83[MEX][hapmap];0.95[ASN][1000 genomes]
rs4272427	0.80[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs4294230	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4512420	0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs4523300	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4559283	0.80[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs4623474	0.82[ASW][hapmap];0.87[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4736844	0.84[CHB][hapmap];0.81[CHD][hapmap];0.90[ASN][1000 genomes]
rs4736846	0.81[ASN][1000 genomes]
rs4737087	0.86[ASN][1000 genomes]
rs4737088	0.85[ASN][1000 genomes]
rs6474429	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6989998	0.84[CHB][hapmap]
rs7001861	0.84[CHB][hapmap];0.87[CHD][hapmap];0.96[ASN][1000 genomes]
rs7016673	0.96[ASN][1000 genomes]
rs7463608	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs773068	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs773069	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes]
rs773071	0.87[AMR][1000 genomes]
rs7819737	0.95[ASN][1000 genomes]
rs7825403	0.81[ASN][1000 genomes]
rs7829140	0.84[ASN][1000 genomes]
rs7829867	0.80[CEU][hapmap]
rs7835112	0.81[ASN][1000 genomes]
rs7835435	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap]
rs7838753	0.80[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs7838899	0.91[AMR][1000 genomes]
rs7839805	0.86[ASN][1000 genomes]
rs7845889	0.81[ASN][1000 genomes]
rs899851	0.84[CHB][hapmap]
rs9298632	0.85[ASN][1000 genomes]
rs9643854	0.84[CHB][hapmap]
rs9643855	0.84[CHB][hapmap]
rs9643892	0.84[CHB][hapmap]
rs9657192	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1024688	chr8:42709414-43333639	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv539563	chr8:42709414-43333639	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1033927	chr8:42748842-43575771	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv533812	chr8:42755447-43528350	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv1032781	chr8:42772394-43461484	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv1021281	chr8:42807619-43472678	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv429912	chr8:42852444-43701143	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv869499	chr8:42858608-43541986	Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	nsv916847	chr8:42858611-43541984	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1027779	chr8:42863024-43729296	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv1025336	chr8:42905623-43333638	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
13	nsv539564	chr8:42905623-43333638	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
14	nsv831302	chr8:42909483-43105520	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42912800-42920400	Weak transcription	Aorta	Aorta
2	chr8:42912800-42924200	Weak transcription	Gastric	stomach
3	chr8:42912800-42924600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:42912800-42936000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:42912800-42936600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:42912800-42943800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:42912800-42948000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:42913000-42919000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:42913000-42920200	Weak transcription	HSMMtube	muscle
10	chr8:42913000-42920400	Weak transcription	Left Ventricle	heart
11	chr8:42913000-42920400	Weak transcription	Right Ventricle	heart
12	chr8:42913000-42924000	Weak transcription	Esophagus	oesophagus
13	chr8:42913000-42924000	Weak transcription	Pancreas	Pancrea
14	chr8:42913000-42924400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:42913000-42924400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:42913000-42924400	Weak transcription	Spleen	Spleen
17	chr8:42913000-42941200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:42913400-42920400	Weak transcription	Colonic Mucosa	Colon
19	chr8:42913600-42919200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:42913600-42919600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:42913600-42920400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr8:42913600-42920600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:42913600-42921800	Weak transcription	Psoas Muscle	Psoas
24	chr8:42913600-42940600	Weak transcription	Small Intestine	intestine
25	chr8:42914400-42919200	Weak transcription	HUVEC	blood vessel
26	chr8:42914400-42920400	Weak transcription	Brain Hippocampus Middle	brain
27	chr8:42914400-42920600	Weak transcription	Ovary	ovary
28	chr8:42914400-42922800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:42914400-42924800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:42914400-42933000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:42914400-42942000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr8:42914400-42942800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:42914400-42947800	Weak transcription	Stomach Mucosa	stomach
34	chr8:42914600-42920600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr8:42914800-42919000	Weak transcription	NH-A	brain
36	chr8:42914800-42934800	Weak transcription	Fetal Heart	heart
37	chr8:42914800-42942800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:42915000-42919600	Strong transcription	K562	blood
39	chr8:42915200-42920200	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:42915200-42920400	Weak transcription	Brain Anterior Caudate	brain
41	chr8:42915200-42922200	Weak transcription	Brain Substantia Nigra	brain
42	chr8:42915200-42924600	Weak transcription	Brain Angular Gyrus	brain
43	chr8:42915200-42942000	Strong transcription	Fetal Intestine Large	intestine
44	chr8:42915400-42920200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr8:42915400-42920600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:42915400-42947200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr8:42915600-42935000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:42915800-42922800	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr8:42916200-42941600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr8:42916200-42942000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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