Variant report

Variant	rs10958877
Chromosome Location	chr9:10079912-10079913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10119561	0.94[JPT][hapmap]
rs10122899	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10511532	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10958865	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10958867	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12237354	0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes]
rs12237805	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12238670	0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes]
rs12554626	1.00[EUR][1000 genomes]
rs12683509	1.00[EUR][1000 genomes]
rs1661048	0.94[JPT][hapmap]
rs16930975	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1704030	0.94[JPT][hapmap]
rs1704031	0.94[JPT][hapmap]
rs1778516	0.94[JPT][hapmap]
rs291316	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs367628	0.94[JPT][hapmap]
rs368297	0.93[JPT][hapmap]
rs373184	0.94[JPT][hapmap]
rs377907	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs396845	0.94[JPT][hapmap]
rs410553	0.94[JPT][hapmap]
rs414987	0.94[JPT][hapmap]
rs417403	0.94[JPT][hapmap]
rs417576	0.94[JPT][hapmap]
rs419387	0.94[JPT][hapmap]
rs426448	0.94[JPT][hapmap]
rs440764	0.94[JPT][hapmap]
rs443698	0.94[JPT][hapmap]
rs445608	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs446874	0.94[JPT][hapmap]
rs449090	0.94[JPT][hapmap]
rs565315	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7021364	0.94[JPT][hapmap];1.00[EUR][1000 genomes]
rs832241	0.94[JPT][hapmap]
rs9298651	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1021380	chr9:9943339-10126281	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv539989	chr9:9943339-10126281	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892301	chr9:9971050-10144584	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892302	chr9:9974221-10158866	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv466155	chr9:9989765-10091133	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613370	chr9:9989765-10091133	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv831506	chr9:10040172-10204609	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv892303	chr9:10054994-10099327	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv824850	chr9:10058091-10134157	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv892304	chr9:10061872-10119157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv892305	chr9:10061872-10123735	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv613371	chr9:10075721-10101169	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv613372	chr9:10077180-10102903	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv892306	chr9:10077180-10127876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10079000-10080400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:10079000-10080600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:10079000-10080600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:10079000-10080600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr9:10079200-10080400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:10079200-10080600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:10079200-10080600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:10079400-10080400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:10079400-10080400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:10079600-10080400	Enhancers	Fetal Brain Female	brain

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