Variant report

Variant	rs10959491
Chromosome Location	chr9:11062746-11062747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:11056337..11059587-chr9:11061284..11064646,4	K562	blood:
2	chr9:11047082..11049411-chr9:11061377..11064321,2	K562	blood:
3	chr9:11056159..11057837-chr9:11062194..11064646,2	K562	blood:
4	chr9:11047509..11049109-chr9:11061184..11063575,2	MCF-7	breast:
5	chr9:11052013..11055648-chr9:11062078..11065783,4	K562	blood:
6	chr9:11051115..11054715-chr9:11062496..11065504,4	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10511565	1.00[ASN][1000 genomes]
rs10733223	1.00[ASN][1000 genomes]
rs10756174	1.00[ASN][1000 genomes]
rs10756181	1.00[ASN][1000 genomes]
rs10756182	1.00[ASN][1000 genomes]
rs10756183	1.00[ASN][1000 genomes]
rs10756184	1.00[ASN][1000 genomes]
rs10756185	1.00[ASN][1000 genomes]
rs10809319	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10959478	0.81[GIH][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap]
rs10959480	0.83[EUR][1000 genomes]
rs10959490	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787621	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790468	1.00[ASN][1000 genomes]
rs11791444	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12216900	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376116	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12376138	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1334023	1.00[ASN][1000 genomes]
rs1334024	1.00[ASN][1000 genomes]
rs1334026	1.00[ASN][1000 genomes]
rs1334028	0.85[EUR][1000 genomes]
rs1334040	1.00[ASN][1000 genomes]
rs1413378	1.00[ASN][1000 genomes]
rs1413379	1.00[ASN][1000 genomes]
rs16926933	0.83[EUR][1000 genomes]
rs16926968	1.00[ASN][1000 genomes]
rs1931399	1.00[ASN][1000 genomes]
rs1931400	0.83[EUR][1000 genomes]
rs2382262	1.00[ASN][1000 genomes]
rs4421446	1.00[ASN][1000 genomes]
rs4740477	1.00[ASN][1000 genomes]
rs4741105	1.00[ASN][1000 genomes]
rs4741106	1.00[ASN][1000 genomes]
rs4741107	1.00[ASN][1000 genomes]
rs4741108	1.00[ASN][1000 genomes]
rs4741111	1.00[ASN][1000 genomes]
rs55710426	1.00[ASN][1000 genomes]
rs56077961	1.00[ASN][1000 genomes]
rs56217133	1.00[ASN][1000 genomes]
rs56323675	1.00[ASN][1000 genomes]
rs56348498	1.00[ASN][1000 genomes]
rs56357652	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527008	1.00[ASN][1000 genomes]
rs62527036	1.00[ASN][1000 genomes]
rs62527037	1.00[ASN][1000 genomes]
rs62527046	1.00[ASN][1000 genomes]
rs62527887	0.84[EUR][1000 genomes]
rs62527917	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62530676	0.85[EUR][1000 genomes]
rs6415715	1.00[ASN][1000 genomes]
rs6474632	1.00[ASN][1000 genomes]
rs6474633	1.00[ASN][1000 genomes]
rs72711010	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711049	1.00[ASN][1000 genomes]
rs72711050	1.00[ASN][1000 genomes]
rs7847266	1.00[ASN][1000 genomes]
rs7858303	1.00[ASN][1000 genomes]
rs7858827	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv529475	chr9:10648009-11435662	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869473	chr9:10648009-11457399	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1023275	chr9:10681431-11191502	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv613404	chr9:10684803-11133965	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv613405	chr9:10692461-11139558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv613407	chr9:10753219-11280652	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1021035	chr9:10755356-11281192	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv917281	chr9:10786005-11277779	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1024662	chr9:10786074-11244071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv539999	chr9:10786074-11244071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv892333	chr9:10957549-11091254	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1033615	chr9:10972764-11530615	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv540000	chr9:10972764-11530615	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1015239	chr9:10992230-11246257	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1022325	chr9:11003058-11072447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1024126	chr9:11010337-11102080	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1019436	chr9:11033008-11247205	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11044800-11063200	Weak transcription	K562	blood
2	chr9:11052200-11063200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:11062200-11063200	Weak transcription	Hela-S3	cervix

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