Variant report

Variant	rs10961286
Chromosome Location	chr9:13859494-13859495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10810046	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12342957	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13300686	1.00[AFR][1000 genomes]
rs71507391	1.00[AFR][1000 genomes]
rs71507392	1.00[AFR][1000 genomes]
rs71507393	1.00[AFR][1000 genomes]
rs7858214	0.89[EUR][1000 genomes]
rs9969684	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13856400-13862600	Weak transcription	Left Ventricle	heart
3	chr9:13856800-13860200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:13857200-13860000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13857600-13860200	Weak transcription	Adipose Nuclei	Adipose
6	chr9:13857600-13863000	Weak transcription	HSMM	muscle
7	chr9:13857800-13862000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:13858200-13862600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:13858400-13860200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:13858800-13861800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:13858800-13862200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:13859000-13860600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:13859200-13859600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr9:13859400-13860200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:13859400-13862600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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