Variant report

Variant	rs10961344
Chromosome Location	chr9:14030100-14030101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14025076..14027814-chr9:14030099..14033477,4	K562	blood:
2	chr9:14024941..14026967-chr9:14028940..14031820,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf146-1	chr9:14029952-14030114	XLOC_007286
2	lnc-C9orf146-1	chr9:14029951-14030114	NONHSAT130240

Variant related genes	Relation type
ENSG00000235533	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14027400-14030200	Weak transcription	Fetal Intestine Large	intestine
2	chr9:14027400-14030200	Weak transcription	Left Ventricle	heart
3	chr9:14027400-14030800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:14027400-14032200	Weak transcription	Lung	lung
5	chr9:14027600-14030800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:14027600-14030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:14027800-14030400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:14027800-14030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:14027800-14030800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:14027800-14030800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:14027800-14031000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:14027800-14031000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:14028400-14030400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:14029400-14030800	Enhancers	Fetal Heart	heart
15	chr9:14029600-14031800	Active TSS	Fetal Muscle Trunk	muscle
16	chr9:14029800-14030200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:14029800-14030200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:14029800-14030200	Enhancers	Fetal Brain Male	brain
19	chr9:14029800-14030200	Flanking Active TSS	Hela-S3	cervix
20	chr9:14029800-14030200	Flanking Active TSS	HSMM	muscle
21	chr9:14029800-14030200	Flanking Active TSS	NHEK	skin
22	chr9:14029800-14030400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:14029800-14030400	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr9:14029800-14030600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:14029800-14030800	Active TSS	Colon Smooth Muscle	Colon
26	chr9:14029800-14030800	Enhancers	Fetal Intestine Small	intestine
27	chr9:14029800-14030800	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr9:14029800-14030800	Active TSS	Ovary	ovary
29	chr9:14029800-14030800	Enhancers	HSMMtube	muscle
30	chr9:14029800-14031000	Active TSS	Psoas Muscle	Psoas
31	chr9:14029800-14031000	Enhancers	Rectal Smooth Muscle	rectum
32	chr9:14029800-14031000	Enhancers	Stomach Mucosa	stomach
33	chr9:14029800-14031400	Active TSS	Aorta	Aorta
34	chr9:14029800-14031400	Active TSS	Right Atrium	heart
35	chr9:14029800-14031400	Active TSS	Right Ventricle	heart
36	chr9:14029800-14031400	Flanking Active TSS	HUVEC	blood vessel
37	chr9:14029800-14031600	Active TSS	Stomach Smooth Muscle	stomach
38	chr9:14029800-14032600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr9:14030000-14030200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:14030000-14030400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:14030000-14030400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:14030000-14030400	Active TSS	Muscle Satellite Cultured Cells	--
43	chr9:14030000-14030400	Active TSS	Adipose Nuclei	Adipose
44	chr9:14030000-14030400	Active TSS	Fetal Muscle Leg	muscle
45	chr9:14030000-14030400	Active TSS	Fetal Stomach	stomach
46	chr9:14030000-14030600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:14030000-14030600	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr9:14030000-14030800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:14030000-14030800	Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr9:14030000-14031400	Active TSS	Fetal Kidney	kidney

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