Variant report

Variant	rs10961384
Chromosome Location	chr9:14128081-14128082
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511590	0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs10738353	0.91[EUR][1000 genomes]
rs10810092	0.92[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs10961385	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13284590	0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs13298724	0.97[EUR][1000 genomes]
rs16931379	0.87[EUR][1000 genomes]
rs17210326	0.93[EUR][1000 genomes]
rs2307079	0.90[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs2382436	0.97[EUR][1000 genomes]
rs35381921	0.93[EUR][1000 genomes]
rs36097937	0.94[EUR][1000 genomes]
rs3780582	0.95[GIH][hapmap]
rs475732	0.90[EUR][1000 genomes]
rs483669	0.84[EUR][1000 genomes]
rs498010	0.85[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs510970	0.85[CEU][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs551272	0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs551362	0.92[EUR][1000 genomes]
rs552338	0.90[EUR][1000 genomes]
rs571693	0.87[EUR][1000 genomes]
rs573057	0.86[CEU][hapmap]
rs576216	0.85[CEU][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs693566	0.92[EUR][1000 genomes]
rs7018755	0.94[EUR][1000 genomes]
rs7021992	0.83[EUR][1000 genomes]
rs7024088	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7032993	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7034613	0.92[EUR][1000 genomes]
rs7863254	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	esv1802101	chr9:14125907-14137320	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14097400-14135400	Weak transcription	HSMMtube	muscle
2	chr9:14101800-14128200	Weak transcription	Esophagus	oesophagus
3	chr9:14103400-14128400	Weak transcription	Brain Angular Gyrus	brain
4	chr9:14108800-14143800	Weak transcription	Fetal Intestine Small	intestine
5	chr9:14110000-14128400	Weak transcription	Fetal Kidney	kidney
6	chr9:14116400-14137800	Weak transcription	Small Intestine	intestine
7	chr9:14116600-14133400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:14116600-14159200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:14116600-14179200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:14116800-14128600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:14116800-14156000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:14117000-14171200	Weak transcription	Hela-S3	cervix
13	chr9:14117400-14130400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:14120200-14159000	Weak transcription	NHLF	lung
15	chr9:14120400-14130200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:14120600-14128400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:14120600-14130400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:14120600-14131400	Weak transcription	Pancreas	Pancrea
19	chr9:14120600-14132600	Weak transcription	Psoas Muscle	Psoas
20	chr9:14120600-14133600	Weak transcription	Right Ventricle	heart
21	chr9:14120600-14151600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:14120600-14154800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:14120600-14159000	Weak transcription	NH-A	brain
24	chr9:14120800-14135400	Weak transcription	NHEK	skin
25	chr9:14121600-14129000	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:14121600-14143600	Weak transcription	Brain Substantia Nigra	brain
27	chr9:14123800-14136000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:14123800-14198600	Weak transcription	Gastric	stomach
29	chr9:14124000-14130000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:14124600-14133200	Weak transcription	Brain Germinal Matrix	brain
31	chr9:14125800-14133200	Weak transcription	Ovary	ovary
32	chr9:14125800-14133800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:14126400-14135400	Weak transcription	HMEC	breast
34	chr9:14126400-14148200	Weak transcription	Placenta	Placenta
35	chr9:14126600-14130600	Weak transcription	Fetal Brain Male	brain
36	chr9:14126600-14142000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:14126800-14130000	Weak transcription	Fetal Brain Female	brain
38	chr9:14126800-14130200	Weak transcription	Fetal Heart	heart
39	chr9:14126800-14130600	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:14126800-14144800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr9:14127000-14131000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:14127000-14131200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:14127000-14131200	Weak transcription	Fetal Muscle Leg	muscle
44	chr9:14127000-14131400	Weak transcription	Left Ventricle	heart
45	chr9:14127000-14131600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:14127000-14131800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:14127000-14132800	Weak transcription	Liver	Liver
48	chr9:14127000-14133200	Weak transcription	Fetal Stomach	stomach
49	chr9:14127000-14133400	Weak transcription	Adipose Nuclei	Adipose
50	chr9:14127000-14136600	Weak transcription	A549	lung

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