Variant report

Variant	rs10961406
Chromosome Location	chr9:14182043-14182044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14180288..14182933-chr9:14314004..14316162,2	MCF-7	breast:
2	chr9:14180541..14184155-chr9:14313790..14316409,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10120632	1.00[AFR][1000 genomes]
rs10481501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12156582	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28379954	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv892596	chr9:14145487-14208724	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv892597	chr9:14163383-14233159	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14123800-14198600	Weak transcription	Gastric	stomach
2	chr9:14166200-14183200	Weak transcription	Esophagus	oesophagus
3	chr9:14170400-14186200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:14177200-14203400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:14179600-14183400	Enhancers	Fetal Heart	heart
6	chr9:14179600-14183400	Enhancers	NH-A	brain
7	chr9:14180000-14183400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:14180800-14182200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:14180800-14183600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:14181000-14182400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:14181000-14182400	Weak transcription	Fetal Brain Male	brain
12	chr9:14181000-14189200	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:14181000-14189200	Weak transcription	Small Intestine	intestine
14	chr9:14181000-14192400	Weak transcription	Pancreas	Pancrea
15	chr9:14181200-14182400	Enhancers	Fetal Brain Female	brain
16	chr9:14181200-14182800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:14181400-14182200	Enhancers	Liver	Liver
18	chr9:14181400-14182400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr9:14181400-14182400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:14181400-14182600	Enhancers	Brain Angular Gyrus	brain
21	chr9:14181400-14182800	Enhancers	Fetal Lung	lung
22	chr9:14181400-14183400	Enhancers	HSMM	muscle
23	chr9:14181400-14185400	Weak transcription	Stomach Mucosa	stomach
24	chr9:14181600-14182400	Enhancers	Aorta	Aorta
25	chr9:14181600-14182400	Enhancers	Brain Hippocampus Middle	brain
26	chr9:14181600-14182600	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:14181600-14182600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:14181600-14182800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:14181600-14182800	Enhancers	Brain Anterior Caudate	brain
30	chr9:14181600-14183000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:14181600-14183400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:14181600-14187000	Weak transcription	A549	lung
33	chr9:14181800-14182400	Enhancers	Right Ventricle	heart
34	chr9:14181800-14182600	Enhancers	Adipose Nuclei	Adipose
35	chr9:14181800-14182600	Enhancers	Colon Smooth Muscle	Colon
36	chr9:14181800-14183000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:14181800-14183400	Enhancers	Psoas Muscle	Psoas
38	chr9:14181800-14183800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr9:14181800-14183800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:14181800-14186800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:14182000-14182200	Enhancers	Rectal Smooth Muscle	rectum
42	chr9:14182000-14182400	Enhancers	Brain Substantia Nigra	brain
43	chr9:14182000-14182600	Weak transcription	Left Ventricle	heart
44	chr9:14182000-14182800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr9:14182000-14183000	Enhancers	Osteobl	bone
46	chr9:14182000-14183200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:14182000-14183400	Enhancers	HMEC	breast
48	chr9:14182000-14183400	Enhancers	HUVEC	blood vessel
49	chr9:14182000-14183400	Enhancers	NHEK	skin
50	chr9:14182000-14185400	Weak transcription	Stomach Smooth Muscle	stomach

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